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1.
Sci Data ; 11(1): 155, 2024 Feb 01.
Article En | MEDLINE | ID: mdl-38302487

Urinary tract infection (UTI) is a common disorder. Its diagnosis can be made by microscopic examination of voided urine for markers of infection. This manual technique is technically difficult, time-consuming and prone to inter-observer errors. The application of computer vision to this domain has been slow due to the lack of a clinical image dataset from UTI patients. We present an open dataset containing 300 images and 3,562 manually annotated urinary cells labelled into seven classes of clinically significant cell types. It is an enriched dataset acquired from the unstained and untreated urine of patients with symptomatic UTI using a simple imaging system. We demonstrate that this dataset can be used to train a Patch U-Net, a novel deep learning architecture with a random patch generator to recognise urinary cells. Our hope is, with this dataset, UTI diagnosis will be made possible in nearly all clinical settings by using a simple imaging system which leverages advanced machine learning techniques.


Deep Learning , Urinary Tract Infections , Humans , Diagnostic Tests, Routine , Machine Learning , Microscopy , Urinary Tract Infections/diagnosis , Urinary Tract Infections/drug therapy , Urinary Tract Infections/urine
2.
Mucosal Immunol ; 16(1): 61-71, 2023 02.
Article En | MEDLINE | ID: mdl-36642381

Urinary tract infections (UTIs) exert a significant health and economic cost globally. Approximately one in four people with a previous history of UTI continue to develop recurrent or chronic infections. Research on UTI has primarily concentrated on pathogen behavior, with the focus gradually shifting to encompass the host immune response. However, these are centered on mouse models of Escherichia coli infection, which may not fully recapitulate the infective etiology and immune responses seen in humans. The emerging field of the urobiome also inadvertently confounds the discrimination of true UTI-causing pathogens from commensals. This review aims to present a novel perspective on chronic UTI by linking microbiology with immunology, which is commonly divergent in this field of research. It also describes the challenges in understanding chronic UTI pathogenesis and the human bladder immune response, largely conjectured from murine studies. Lastly, it outlines the shortcomings of current diagnostic methods in identifying individuals with chronic UTI and consequently treating them, potentially aggravating their disease due to mismanagement of prior episodes. This discourse highlights the need to consider these knowledge gaps and encourages more relevant studies of UTIs in humans.


Escherichia coli Infections , Urinary Tract Infections , Humans , Animals , Mice , Immunity, Mucosal , Escherichia coli Infections/microbiology , Bacteria , Urinary Bladder
3.
BMJ Case Rep ; 14(10)2021 Oct 01.
Article En | MEDLINE | ID: mdl-34598958

Multisystem inflammatory syndrome in adults (MIS-A) is an uncommon and under-recognised postinfectious manifestation that presents 4-6 weeks after COVID-19 infection. Patients affected tend to be young or middle-aged, from ethnic minority backgrounds and previously healthy. In addition to high fever and myalgia, there are a myriad of extrapulmonary symptoms and signs, including cardiac, gastrointestinal, neurological and dermatological involvement. Cardiovascular shock and markedly raised inflammatory markers are prominent features, while significant hypoxia is uncommon. Patients respond well to corticosteroid therapy, but failure of clinicians to recognise this recently identified phenomenon, which can mimic common conditions including sepsis, could delay diagnosis and treatment. Here we present a case of MIS-A in an adult woman, compare her presentation and management with other similar case reports, and reflect on how clinicians can learn from our experiences.


COVID-19 , Adult , Ethnicity , Female , Humans , Middle Aged , Minority Groups , SARS-CoV-2 , Syndrome , Systemic Inflammatory Response Syndrome/diagnosis , Systemic Inflammatory Response Syndrome/etiology
4.
In Vivo ; 33(5): 1393-1401, 2019.
Article En | MEDLINE | ID: mdl-31471384

Power morcellation remains one of the most significant developments in minimal access surgery over the past decade, allowing many more patients to benefit from the least invasive surgical route. However, its use is not without controversy, particularly with regards to the risks of an undiagnosed leiomyosarcoma. Increased media and, in particular, on-going social media coverage since events in 2014 have only served to intensify the debate, culminating in the Food and Drug Administration essentially 'banning' its use in the USA. Practice however continues to vary and this technique remains widely used in Europe and in particular the UK. The aim of this article was to review the development of power morcellation in gynaecology and the underlying risks, including that of undiagnosed leiomyosarcoma, as well as appraise the evolving literature on patient awareness and informed consent and the wider implications of morcellation restriction.


Leiomyoma/surgery , Morcellation , Animals , Disease Management , Evidence-Based Practice , Female , Humans , Incidence , Leiomyoma/diagnosis , Leiomyoma/epidemiology , Leiomyosarcoma/diagnosis , Leiomyosarcoma/epidemiology , Leiomyosarcoma/surgery , Minimally Invasive Surgical Procedures/methods , Minimally Invasive Surgical Procedures/trends , Morcellation/adverse effects , Morcellation/methods , Quality Improvement , Undiagnosed Diseases/epidemiology
5.
BMJ Case Rep ; 12(8)2019 Aug 04.
Article En | MEDLINE | ID: mdl-31383677

Anti-N-methyl-D-aspartate (NMDA) receptor encephalitis is rarely seen in women with ovarian teratoma. It is characterised by neuropsychiatric symptoms and may also cause autonomic imbalance. We present the case of a 16-year-old nulliparous woman who presented with an acute history of seizures and neurogenic bladder. Antiviral and antiepileptic therapy conferred no therapeutic benefit. A cystic pelvic mass measuring 185×140×92 mm was identified separate from the bladder. Serum titres of NMDA receptor antibodies were significantly elevated. The mass was surgically removed and histology revealed benign ovarian teratoma with NMDA receptors. The patient made a rapid improvement and had full resolution of urinary and neuropsychiatric symptoms within 1 year. This case demonstrates that increased awareness in adolescents is crucial for avoiding symptom dismissal, misdiagnosis and inappropriate treatment of this condition. Surgical removal of the teratoma should be the first line therapy of anti-NMDA-receptor encephalitis as this often leads to symptom resolution soon after.


Anti-N-Methyl-D-Aspartate Receptor Encephalitis/complications , Ovarian Neoplasms/complications , Teratoma/complications , Urinary Bladder, Neurogenic/etiology , Adolescent , Anti-N-Methyl-D-Aspartate Receptor Encephalitis/immunology , Female , Humans , Ovarian Neoplasms/immunology , Teratoma/immunology , Urinary Bladder, Neurogenic/immunology
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